Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs717796 chr6:127789979 G/A 0.000101 497 22.45 32.87 31.47 KM Plot
THCA rs7186625 chr16:79275169 C/T 4.08E-12 503 31.5 31.67 19.35 KM Plot
THCA rs72137227 chr6:133119775 CTG/C 4.46E-9 501 31.47 33.7 23.53 KM Plot
THCA rs72160546 chr3:97311296 TATAA/T 7.62E-5 502 31.47 31.53 34.07 KM Plot
THCA rs72162503 chr12:14437683 GGA/G 5.41E-5 492 31.37 38.7 32.45 KM Plot
THCA rs7246772 chr19:9886283 C/T 4.81E-6 498 31.45 33.22 32.9 KM Plot
THCA rs7259372 chr19:9843287 C/A 4.8E-6 499 31.45 32.9 32.9 KM Plot
THCA rs7259777 chr19:44614045 C/T 0.000117 503 31.7 30.53 27.4 KM Plot
THCA rs72620826 chr2:238384819 C/T 1.11E-16 496 31.4 34.4 34.1 KM Plot
THCA rs72620827 chr2:238387332 A/G 0 498 31.47 33.97 39.2 KM Plot
THCA rs72620828 chr2:238389862 C/T 0 499 31.45 33.5 39.2 KM Plot
THCA rs72620829 chr2:238392000 C/T 1.43E-6 496 31.32 35.6 34.1 KM Plot
THCA rs72620831 chr2:238407680 G/A 0 497 31.15 33.5 39.2 KM Plot
THCA rs72647102 chr8:58012408 C/T 6.89E-6 500 31.3 36.17 36.93 KM Plot
THCA rs72649105 chr8:58018672 C/T 6.89E-6 500 31.3 36.17 36.93 KM Plot